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Weekly news 30.07.2018

Applications are open for the ELIXIR Italy Advanced Docker Course on 26-27 September 2018 at University of Milano-Bicocca, Italy.

 "Tool Training for Proteomics" will be hosted on 16th October 2018 at Ruhr University Bochum as part of the de.NBI (www.denbi.de) training programme.Besides the tool based sessions we offer a "bring your own data" session to discuss and try out analysis strategies of your own special data. As the number of participants is limited, please register soon at http://l.rub.de/20f01037 if you are interested. Further information about the course is available at the registration page and soon also at http://www.denbi.de/training-courses.

Weekly news 23.07.2018

Publications from Björn Grüning's team

• Bioconda: sustainable and comprehensive software distribution for the life sciences
• Practical Computational Reproducibility in the Life Sciences 
• Community-Driven Data Analysis Training for Biology

The NETTAB 2018 Workshop on Building a FAIR Bioinformatics environment will take place from 22-24 October 2018 in Genova, Italy. The tutorial is organised in collaboration with ELIXIR and the workshop/hackathon by ELIXIR Netherlands and ELIXIR Czech Republic. For more information, please visit the event website.

A research group of ELIXIR Spain is jointly organising a 5-day GATK Workshop on 17 September, 2018 in Seville, Spain. A tutorial on "Disease variant prioritisation tutorial" is to take place on 21 September, 2018. GATK workshops are designed to provide a comprehensive on-boarding experience to new users, as well as access to more advanced understanding for users who arealready familiar with the toolkit. More information is available on the event website.

Weekly news 16.07.2018

For those who post reprints, or track them from the most recent science updates - you can now find reprints alongside peer reviewed research in Europe PMC and claim them to your ORCID. Over 37,000 preprint abstracts from bioRxiv, PeerJ Preprints, ChemRxiv, and F1000 can be searched both on the website and via the API. Each preprint is clearly labelled and cross-linked to the published article. More information is available in the release announcement.

ELIXIR-BE in collaboration with ELIXIR-NL, and DTL, are pleased to announce the ELIXIR-EXCELERATE Train the Trainer (TtT) workshop from 20-21 August in Antwerp, Belgium. Candidates from ELIXIR Nodes might apply for an ELIXIR Staff Exchange Programme Travel Grant.

Registration is now open for the ELIXIR-NL Galaxy Course - Bioinformatics for Translational Medicine using Galaxy: see it, do it, teach it!, scheduled from 17-19 October 2018 in Amsterdam, the Netherlands.

Weekly news 09.07.2018

The registration for ELIXIR Innovation and SME Forum in Frankfurt is now open. The event will take place on 15-16 October in Frankfurt, Germany, and will focus on data-driven innovation in industrial biotechnology.

ELIXIR-EXCELERATE, in collaboration with ELIXIR Italy, is pleased to announce a Train the Trainer (TtT) event on 27-28 September in Rome, Italy. Candidates from ELIXIR Nodes might apply for an ELIXIR Staff Exchange Programme Travel Grant when they fill their application form.

Registrations is open for the SIB course on “Advanced Statistics: Statistical Modeling”, in Lausanne, Switzerland, on 20-23 August 2018.

Third member of ELIXIR Estonia has participated at the Train the Trainer event of ELIXIR

Ivan Kuzmin, one of our core members of the development team, took part at the CORBEL Train the Trainer event in Amsterdam. During the event, all participants got feedback and new ideas on how to better deliver training. After taking part of the event Ivan joins with Priit Adler and Reidar Andreson who have participated at similar events beforehand.

Weekly news 18.06.2018

Two papers on AAI (Federated Identity Management for Research Collaborations and A Common AAI for Life Science Research) were presented at the TNC18 Conference in Trondheim, Norway, on 10-14 June 2018.

EMBL-EBI is organising training course Exploring Biological Sequences on 13-15 November 2018 in Hinxton, UK. The registration is now open.

Registrations are open for the SIB course Comparative Genomics, in Lausanne, Switzerland, on 3-5 September 2018

ELIXIR Estonia at ELIXIR All Hands in Berlin

ELIXIR Estonia was represented at the annual All Hands meeting in Berlin with seven members.

During the four intense days we met with colleagues across Europe and introduced our work on EDAMmap, Virtual Coffee Room and ELIXIR Estonia Node to them.

ELIXIR Train the Trainer event on 18-19th of September in Tartu

ELIXIR Train the Trainer event on 18-19th of September in Tartu

Lecture on "Interdisciplinary perspectives on bioinformatics training: lessons from cognitive science, biostatistics, and education”.

18th of September, 12:00, Liivi 2-224

Bioinformatics is a highly interdisciplinary domain. Currently there are many threads of discussions and effort globally aimed at ensuring that formal (undergraduate/graduate) training represents the biological and the computational aspects sufficiently to equip new practitioners from both of these domains to engage and participate in the field. Training opportunities are struggling less with this explicit interdisciplinarity because individuals who recognise that they require some targeted, “point of need” training are already prepared in some sense to integrate the biological and the computational aspects of the training. This talk will focus on how formal (degree programs) and informal (training/training programs) can be strengthened by integrating the disciplinary work from the fields of education and cognitive science, with examples of successes and failures of this integration from the domain of biostatistics.

Workshop on “Learning goals, teaching goals, and assessment”.

19th of September, 10:00 - 14:00, Liivi 2-225

Bioinformatics training has important similarities and even more important differences as compared to bioinformatics “education” within a degree program. Typically, the training opportunities are highly focused and short, while the more formal educational opportunities are longer, embedded within other instruction, and may require assessment like tests, papers, or independent research projects. However, there are key features of adult learning and educational psychology that can help teaching in both the training and educational contexts. This workshop will define and explore teaching goals, which often feature what the instructor feels must be “covered” or conveyed; and contrast these with learning goals, which represent what the instructor intends that students will be able to do after the instruction. In the four hours we have together, we will have some lecture based foundational material with exercises around existing training course descriptions, followed by small group work to create or revise learning goals that can engage attendees in one course or sequences of courses. We will also explore how to efficiently plan a course and utilise the limited time to achieve learning goals and promote ongoing engagement with the tools and reasoning that are essential to modern biological sciences and bioinformatics. Participants are encouraged to bring course descriptions and/or learning goals to share, discuss, and work on.

The main target audience for the lecture and workshop are people who develop courses under ELIXIR-EE, but highly recommended also for people who do bioinformatics/biostatistics training in the university.

Lector Rochelle E Tractenberg, PhD, MPH, PhD, PStat®, FASA

Rochelle has strong background in biostatistics and bioinformatics and her areas of interest include statistical methodology and statistical literacy for effective stewardship of the discipline in PhD students/holders; higher education curriculum building and evaluation; neuropsychological assessment; the development and benchmarking of outcomes; experimental design; and longitudinal (latent variable) analytic methods. For more information see her page at https://blogs.commons.georgetown.edu/crom/rochelle-e-tractenberg/