Skip to content

ELIXIR Estonia

bio.tools: keeping up with the growing world of life-science software

Finding the right research software can be challenging, especially as new tools and databases are continually being developed. bio.tools helps researchers navigate this growing landscape by bringing life-science software together in a single registry. It has grown to over 33,000 tools and databases, described using structured metadata and the EDAM ontology.

ELIXIR Estonia Coffee Morning: research support drop-in

Stuck with your data, code, a tool or a training material? Not sure where to start with R or Python, bioinformatics analysis, data management or FAIR data? Bring your questions to our coffee morning.

Every other Tuesday, 9:30–10:30 (EET/EEST) timed to fit between lectures

Sessions alternate between in-person sessions in Tartu and online sessions.

Eesti keeles allpool

Competence day “AI at the university: skills, responsibility and critical choices”

On 29 September from 11:00–17:30, the university library’s conference hall will host the competence day “Artificial intelligence at the university: skills, responsibility and critical choices”, to which the entire university community is warmly invited. The event is organised by the University of Tartu Centre for Teaching and Learning. After the lunch break, practical workshops will run in two sessions: ELIXIR Estonia will teach data visualisation with the help of artificial intelligence.

Student thesis topics 2026

ELIXIR Estonia builds and maintains web tools and other resources for life science research. We also provide training and consultations in research data management. Our goal is to create solutions that last and stay useful for years to come.

We offer the following topics:

  • Broneeritud - MSc level: Scalable k-mer and graph-based clustering of short peptide sequences under limited memory
  • Võetud - BSc level: Kohalikul tehisintellektimudelil põhinev kakskeelne andmehalduse nõustaja Eesti teadlastele
  • MSc level: Can an open-weight LLM check metadata reliably in Estonian and English?
  • Broneeritud - MSc level: Does good metadata get data reused? GEO as a test bed
  • MSc level: From prose to machine-actionable DMPs
  • Võetud - BSc level: Kas automaatsed FAIR-hindajad on omavahel nõus?
  • Broneeritud - BSc level: Kas kadunud veebiteenuse saab teadusartikli põhjal taaselustada?
  • MSc level: Can AI Agents Reproduce Bioimage Analysis Papers? Evaluating and Improving Open Models and Specialised Agents
  • Võetud - BSc level: Eesti 10 km rahvajooksude osalus- ja tulemustrendid maakondade lõikes aastatel 2016–2026

ELEVATE-DM: Strengthening Data Stewardship Across Europe

Estonia is one of Europe’s most digitally advanced countries. From X-Road to nationally coordinated digital services, we have built an ecosystem that makes sharing and using information remarkably efficient. But strong digital infrastructure alone does not create strong research data management.

As research becomes increasingly collaborative and data-intensive, researchers need more than technology - they need clear guidance, institutional support, professional expertise, and communities that help them manage data throughout its lifecycle. That is exactly what ELEVATE-DM aims to strengthen.

ELIXIR Estonia’s July to December 2025 Highlights

In the second half of 2025, ELIXIR Estonia continued to deepen its collaborations in research data management, both within Estonia and across Europe, while also expanding staff involvement in training activities and knowledge-sharing initiatives. Throughout the period, we placed a stronger focus on data management by participating in and organising events in partnership. A standout moment was co-organising a Nordic Computational Biology Week Conference, an experience that will help us take on larger events in the future. Alongside these activities, our team contributed three new publications, reflecting our ongoing commitment to advancing research and supporting the broader scientific community.