News and announcements

SIB Bioinformatics Awards 2023 are now open to entries

Submitted by Diana on

Bioinformaticians of the world, it's your time to shine! The SIB Bioinformatics Awards promote excellence, diversity and innovation in the field of bioinformatics, and are now open to entries until 31 January 2023. 

SIB created the Bioinformatics Awards in 2008 to acknowledge early career bioinformaticians and ground-breaking resources of national and international standing. The international awards honour excellence in bioinformatics and computational biology within three categories:

The awards are assigned by an international jury, revised by the SIB Award Committee and announced during the biennial [BC]2 Basel Computational Biology Conference.

More info available here: https://www.sib.swiss/science-promotion/bioinformatics-awards

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Free Open Data Courses by Digiriigi Akadeemia

Submitted by Heleri on

Digiriigi Akadeemia is hosting several Open Data related courses. 

In addition to the ABC of Data course, two new free courses have been opened in the Digiriigi Akadeemia environment: ABC of Open Data and Good Practice for Publishing Open Data. 
The ABC of Open Data is intended as a basic level course and creates a general understanding of the topic of Open Data. It is suitable for everyone who feels they need instructions and help decipher the topic to get started in the field.
The good practice of publishing open data is a natural continuation of the ABC training, which talks about higher-quality data disclosure.

More information: www.digiriigiakadeemia.ee

Autumn semester Data Management courses

Submitted by Heleri on

ELIXIR Estonia is continuing with the data management-related lectures and workshops this semester. To get more information about these courses, read below and visit https://elixir.ut.ee/training. 

 

Face-to-Face (F2F) lectures will take place at the Delta building in Tartu (Narva mnt 18, Tartu). 

ONLINE workshops will be held through Zoom (the meeting link will be sent a couple of days before the workshop). 

 

  • 13.09.2022 - Metadata and README (lecture, F2F, 2h) CLOSED

Register: https://forms.gle/6y2FaHMN7nrbA5bR7 

More information: https://elixir.ut.ee/node/448 

  • 27.09.2022 - Licensing Research Outputs (lecture, F2F, 2h) CLOSED

Register: https://forms.gle/ahVcG64FPJvTwuu68 

More information: https://elixir.ut.ee/node/450 

  • 4.10.2022 - How to Make Your Messy Data Usable? - PART 1 (workshop, ONLINE, 2h + independent work) CLOSED

Register: https://forms.gle/bWiBGrpanoot3YR59 

More information: https://elixir.ut.ee/node/456 

  • 25.10.2022 - Data Visualization I - Figures (lecture, F2F, 2h) CLOSED

Register: https://forms.gle/rjiGvJj32qweG5mj6 

More information: https://elixir.ut.ee/node/452 

  • 1.11.2022 - Crash Course of GDPR (lecture, F2F, 2h) - Cancelled

Register: https://forms.gle/dNVQPs3y35k5Ua8y8

More information: https://elixir.ut.ee/node/454 

  • 8.11.2022 - How to Make Your Messy Data Usable? - PART 2 (workshop, ONLINE, 1h + independent work) CLOSED

Register: https://forms.gle/2uMN9RN8LEyT8doM7 

More information: https://elixir.ut.ee/node/456 

 

We do ask you to register for the lecture responsibly. If you can’t attend the course, please let us know as soon as possible via email at elixir@ut.ee. 

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How to Make Your Messy Data Usable? - Beginner and Advanced workshop - 04.10.2022/8.11.2022

Submitted by Heleri on

On the 4th of October 2022, ELIXIR-Estonia will be holding a data management online course: How to Make Your Messy Data Usable? - PART 1. The course will be held in English. This course will be in two parts: a 1.5-hour online lecture on how to make a spreadsheet usable for other people held on the 4th of October at 10:00 in Zoom. The practical workshop on cleaning your messy data with OpenRefine software will be a video lecture you can follow in your own time. Additionally, we will hold 2 Q&A sessions in Zoom, where you can talk about any problems you encountered with the OpenRefine software.

This course will cover how to name your files and variables, version control, compile a data dictionary, and what to do with empty cells. In the second part of this lecture, OpenRefine software is introduced. With this, you can easily clean up the messy data. For the more practical aspect of using the OpenRefine software, we will share a video that will teach the basics. You can watch it anytime and do the lessons yourself. On two days (7.10 and 10.10), there will be a 1h slot (10:00-11:00) on Zoom, when you can come and ask any question you have regarding tables and OpenRefine software. 

 

Workshop information for PART 1: 

Lecture: 4th of October, 2022 at 10:00 (lecture, 1.5h)

Q&A session: 7.10 and 10.10 at 10:00 (Q&A, feedback, 1h)

Place: ZOOM (link will be sent to your email)

Register: CLOSED

Registration closes at 23:59 on 30.09.2022 or when the course gets full.

 

Learning outcomes for the participants: 

  • Compile a data table that abides by the FAIR Principles
  • Recognize what a clean table for others to use looks like
  • Explain how to use OpenRefine to clean the messy data

 

On the 8th of November 2022, ELIXIR-Estonia will be holding a data management online course: How to Make Your Messy Data Usable? - PART 2. The course will be held in English. This course will be in two parts: a 1-hour online lecture on what you can do in OpenRefine, including transformations, expressions, and extensions for the software, held on the 8th of November at 10:00 in Zoom. The practical workshop on how to transform your previously cleaned data with OpenRefine software will be a video lecture that you can follow in your own time. Additionally, we will hold 2 Q&A sessions in Zoom, where you can talk about any problems you encountered with the OpenRefine software.

This is a follow-up workshop for “How to make your messy data usable - PART 1”, where we talked about spreadsheets but also introduced the OpenRefine software. This course will explore the depths of OpenRefine software and see what else it can offer. This will include cleaning the data in bigger batches and unifying the data in one sweep. These include transformations and expressions. Additionally, we will introduce the possibility of downloading additional data from other databases and different extensions OpenRefine software has. 

You should have participated in the PART 1 workshop in order to register for the PART 2. 

 

Workshop information for PART 2: 

Lecture: 8th of November, 2022 at 10:00 (lecture, 1h)

Q&A session: 10.11 at 11:00 and 14.11 at 10:00 (Q&A, feedback, 1h)

Place: ZOOM (link will be sent to your email)

Register: CLOSED

Registration closes at 23:59 on 04.11.2022 or when the course gets full.

 

Learning outcomes for the participants: 

  • Understands what OpenRefine software can do with data
  • Knows what kind of transformations OpenRefine software supports
  • Knows how to write transformations and expressions in OpenRefine software

 

ONLINE workshops will be held through Zoom (the meeting link will be sent a couple of days before the workshop). 

We do ask you to register for the lecture responsibly. If you can’t attend the course, please let us know as soon as possible via email at elixir@ut.ee. 

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Crash Course on GDPR lecture - 01.11.2022

Submitted by Heleri on

On the 1st of November 2022, ELIXIR-Estonia will hold a new data management online course: Crash Course on GDPR. The course will be held in English. 

When handling any kind of information that may help to identify a person, whether directly or indirectly, it must be handled with care. Particular attention should be put to collecting, processing, handling, and storing the data throughout the research process. This is meant for both textual, but also audio, video, and picture data. However, what does this mean for the researcher?

In this lecture, we will go over what GDPR and the Estonian Personal Data Protection Act say when dealing with personal data. Also, we will concentrate on what it means for the researcher working with this data and what he/she/they need to do to abide by these laws. This lecture will also cover the consent form and anonymization/pseudonymization processes. 

 

Information about the lecture

Lecture: 1st of November, 2022 at 14:15 (lecture, 12h)

Place: Delta Building, r1022 (Narva mnt 18), TARTU

Register: REGISTRATION CLOSED

Registration closes at 23:59 on 27.10.2022 or when the course gets full.

 

Learning outcomes for the participants: 

  • Understand the rules and regulations you have to abide by when dealing with sensitive data
  • Understand the safety measures you need to take into account when working with sensitive data
  • Understand the difference between anonymization and pseudonymization

 

F2F lectures will take place at the Delta building in Tartu (Narva mnt 18, Tartu).

We do ask you to register for the lecture responsibly. If you can’t attend the course, please let us know as soon as possible via email at elixir@ut.ee. 

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