Virtual 2 Day Workshop SABIO-RK and FAIRDOMHub / FAIRDOM-SEEK
SABIO-RK is a manually curated database for biochemical reactions and their kinetic properties. FAIRDOMHub is a free research data management platform built upon the FAIRDOM-SEEK software. FAIRDOM-SEEK contains specific features for systems biologists for data and model management. This is an introductory course for SABIO-RK and FAIRDOMHub. You have the option to participate in either one or both of the courses.
SABIO-RK: 25-NOV-2024 2:00 pm - 5:00pm (CET / UTC +1)
FAIRDOM-SEEK: 26-NOV-2024 2:00 pm - 6:00pm (CET / UTC +1)
General information
- Time:
- SABIO-RK: 25-NOV-2024 2:00 pm - 5:00pm (CET / UTC +1)
- FAIRDOM-SEEK: 26-NOV-2024 2:00 pm - 6:00pm (CET / UTC +1)
- Location: Online
Description
SABIO-RK is a manually curated database for biochemical reactions and their kinetic properties. Data are mainly extracted from literature and include detailed information about biochemical reactions, their kinetic rate equations with parameters and experimental conditions.
Agenda:
- Introduction to SABIO-RK
- Hands-on session: manual search and export functionalities
- Hands-on session: programmatic access
FAIRDOMHub is a free research data management platform built upon the FAIRDOM-SEEK software. FAIRDOM-SEEK is an open source tool for uploading, organizing, sharing and publishing scientific research data. FAIRDOM-SEEK contains specific features for systems biologists for data and model management.
Agenda:
- Introduction to FAIRDOMHub / FAIRDOM-SEEK
- Demo of programmatic access
- Hands-on session:
- Storage and exchange of data and models according to the FAIR principles
- Modeling specific functionalities in FAIRDOMHub / FAIRDOM-SEEK
Learning outcomes
Comprehensive understanding of SABIO-RK, FAIRDOMHub / FAIRDOM-SEEK
Prerequisites
For the SABIO-RK hands-on session you will need Python and the Python library Requests.